Installation of the SBPOP PACKAGE
- Unpack downloaded file (SBPOP_PACKAGE_Rev_>>Revision Number<<.zip) file to the desired location
- Start MATLAB (>= R2010a)
- Change into the SBPOP_PACKAGE_Rev_>>Revision Number<< folder
- The first time you install a new revision, run the installSBPOPpackageInitial script. This will not only make the SBPOP PACKAGE functions available in your MATLAB session, it will also compile several C-code functions and libraries for your system
Server installation of the SBPOP PACKAGEThis is easily possible. Please ask your system administrator to install the SBPOP Package. The sysadmin will need to run the installSBPOPpackageInitial script and then the user just starts MATLAB, runs the installSBPOPpackage script and can use SBPOP.
Recommended Third Party Packages
WINDOWS 64bit: C-compilerSelect your favorite compiler that is compatible with MATLAB from here: Mathworks Supported and Compatible Compilers. Then install according to the compilers installation instructions. Start MATLAB and type "mex -setup" and follow the instructions on the screen.
MONOLIX and NONMEMSBPOP integrates nicely with MONOLIX and NONMEM, which are useful tools for parameter estimation in a nonlinear mixed effect modeling setting. Please install them according to their respective installation instructions and update the path information in the SETUP_PATHS_TOOLS.m file in the SBPOP PACKAGE root folder.
Installation of the libSBML package (UNIX, Linux, MAC only)
- Download the libSBML package for MATLAB from here, and follow the installation instructions included in the downloaded package
- Then you need to make sure that both the TranslateSBML and the OutputSBML functions are in the MATLAB path by adding the corresponding folders to the path. You can do this manually in MATLAB or by editing the path information in the installSB.m file (in the SBTOOLBOX2 folder), by setting the variable PATH_libSBMLfunctions
Installation of the SSm Global Optimization Toolbox
- Download the toolbox from here
- Add the root folder of the SSm toolbox to the MATLAB path
- Save the MATLAB path - or do this each time you start MATLAB