The SBPOP Package will be presented at PAGE 2013
NEWS
  • 7th May 2013: Revision 1172 had a minor bug due to packaging of the public version - main impact on running SBPDgui. Fixed now in Revision 1176
  • 2nd May 2013: SBTOOLBOX2 and SBPD are now integrated into the same package, called "SBPOP PACKAGE". The new combined package additionally includes "SBPOP", focusing on PK/PKPD/PBPK models, population modeling, nonlinear mixed effect parameter estimation, clinical trial simulation

The “SBPOP Package”: Efficient Support for Model Based Drug Development – From Mechanistic Models to Complex Trial Simulation

Model-based drug development (MBDD) emphasizes the quantitative integration of the relationships among diseases and disease targets, drug characteristics, and individual variability across studies and development phases for rational and scientifically based decision making. Within MBDD, mathematical models are used to integrate available knowledge and complex heterogeneous data to allow for hypothesis testing, design and optimization of learning experiments/studies, and subsequent confirmation or rejection, leading to increased knowledge (REF).

Model-based drug development deals with a large model space, consisting of, for example, Systems Biology/pathway, physiologically based PKPD, dose-concentration-response, and mechanism based disease models. Fast turnaround of modeling and simulation activities is crucial in order to influence the decision making process in drug development projects. Such a fast turnaround, however, requires that workflows are efficiently supported by powerful and user-friendly tools.

The “SBPOP PACKAGE” has been developed as a toolbox for the widely used general purpose mathematical software MATLAB. It consists of three parts: SBTOOLBOX2, SBPD, and SBPOP. The first two parts are widely used in the area of Systems Biology, implementing functionality for general representation of dynamic models, simulation, analysis, parameter estimation, and high performance simulation. While these parts are ideal for the support of data and information integration in the research and preclinical phases of the drug discovery and development process, the third part (SBPOP) adds seamless functionality for data analysis and exploration, population PK/PD modeling, and clinical trial simulation. An important focus in the development has been on user friendliness, documentation, training material, and extensibility.

The “SBPOP PACKAGE” is continuously developed further to include additional analyses and workflows of standard modeling approaches. The development is driven by real needs in real drug development projects, with the goal to increase efficiency, allowing for timely feedback of results and insights to the decision making process.
 
 
 
 
 
Publications, discussing results obtained with the help of SBTOOLBOX2 and SBPD, are asked to reference the following paper and webpage:
  • Systems Biology Toolbox for MATLAB: A computational platform for research in Systems Biology, Bioinformatics, 22(4), 514-515, 2006. (www.sbtoolbox2.org)
A paper about the complete SBPOP PACKAGE is in preparation.